1  Installation

Follow the steps below to install the latest development version of MAPA from GitHub (the script first installs BiocManager and remotes if you don’t have them):

if (!requireNamespace("BiocManager", quietly = TRUE)) {
 install.packages("BiocManager") 
}

if (!requireNamespace("remotes", quietly = TRUE)) {
 install.packages("remotes") 
}

remotes::install_github(
  "jaspershen-lab/mapa",
  dependencies = TRUE,
  repos = BiocManager::repositories(),
  upgrade = "ask"
)

library(mapa)

Note

Possible Dependency Conflict: If mapa installation failed because the simplifyEnrichment version is incompatible, update Bioconductor to version 3.20 or newer. To do that, you’ll need R environment 4.4.0 or newer.