Softwares

lagCI
lagCI combines sliding windows, LOESS smoothing and bootstrap correction to estimate robust lagged correlations, and identify the causal relationships between molecules.
Last updated on Sep 21, 2025
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lagCI
MAPA
MAPA is a software for pathway-enrichment analysis and enrichment result interpretation using Large Language Modes (LLMs) that turns complex multi-omics datasets into clear biological insight.
Last updated on Sep 20, 2025
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MAPA
TidyMassShiny
TidyMassShiny is a Shiny application that provides an interactive interface for the TidyMass project, enabling users to perform comprehensive metabolomics data analysis and visualization with ease.
Last updated on Sep 21, 2025
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TidyMassShiny
TidyMicrobiome
TidyMicrobiome project is a comprehensive computational framework that can process the whole workflow of data processing and analysis for microbiome data using tidyverse principles.
Last updated on Jul 1, 2024
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TidyMicrobiome
R cookbook
This is myself note book for R study.
Last updated on Jul 1, 2024
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R cookbook
deepPseudoMSI
The deepPseudoMSI project is the first method that convert LC-MS raw data to “images” and then process them using deep learning method for diagnosis.
Last updated on Jul 1, 2024
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deepPseudoMSI
metID
metID is a R packge which is used for metabolite identification based on in-house database and public database based on accurate mass, retention time and/or MS2 spectra.
Last updated on Jul 1, 2024
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metID
TidyMass
TidyMass project is a comprehensive computational framework that can process the whole workflow of data processing and analysis for LC-MS-based untargeted metabolomics using tidyverse principles.
Last updated on Jul 1, 2024
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TidyMass